rs37563692 SNP Detail

Summary

• ID
  rs37563692
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:188710053 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGCTCACAA CCATCCCTAA
  TGAGATCTGA TGCCCTCTCC TGGTGCGTCT GAAGACAGCT ACAGTGTACT TACATATAAT
  AAATAAATAA ATCTTTAAAA AAATTAGATA AATATGGATG GATTATTAAA TCTACTATTA
  AAAGCATGTT ACAGCTATAA TATTACATTG GTAGAGATCT TATATATGTG CACTCCAGAA
  Y
  GGCACTTAGG TCTTCCATCT CTTCACTCCC ACAGATACGT CAAACCTGAA TTTTAGGCAT
  TAAAGGCTTA TAAAGGGTCC TTGAGGATCT GCACTATCAT TAGCACTAGA AGGATATGCT
  TAGACTCTGG GGACGTAGAA GAAGGCTTGG GAGTATGGAG CTGATCGATC CCTAGCAACA
  AAAGGGGTGA GAGCAGATAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51420048	NES14449561	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37563692					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51420048	NES14449561	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:188710053 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Kctd3	potassium channel tetramerisation domain containing 3			Intron
				Noncoding-Transcript-Variant
Rr425733	regulatory region 425733			433 bp proximal
Tssr15705	transcription start site region 15705			548 bp downstream