rs37570300 SNP Detail

Summary

• ID
  rs37570300
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:6095232 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCTCCCGAG TGCTGGGATT
  AAAGGTAGGC GCCACCACGC CCAGCTTTTT TTTTTTTAGA TAGGATCTCA CTCTATAGCT
  GTACGCTGGC CTCAGATTTA TGATGCTCTT CCTGCCTCAG TCTCCCAATT TTCTGGGATT
  GTAGGAGTGG GCCACTATGC TCTGCTCACT ACATGATTTC AGAGGTTGAG TAGACCTGAA
  Y
  TGAAGACCAG ACAAGGGAGC CCTCCCTCGA CATCTTGGGG CCAGGGAAGT TGAAGCCATA
  GGATCAGAGG AAATGTGGCA AGAAAAAAGG CCAACATGGA CACAGAACTT AAATAAAAAC
  AGACAGAGGA AGTAAGACAG ATATATACCT GGGGGAGAGG AGGGATTGCC ACAAAATGTA
  GGAGATTTTC AAGAATGGGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50575718	NES13653311	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37570300					SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50575718	NES13653311	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:6095232 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10491	CpG island 10491	1012 bp proximal
D530017H19Rik	RIKEN cDNA D530017H19 gene	within coordinates
Gm8034	predicted gene 8034	380 bp upstream
Gm59262	predicted gene, 59262	900 bp upstream
Rr370438	regulatory region 370438	1106 bp upstream
Rr405816	regulatory region 405816	721 bp downstream
Rr405817	regulatory region 405817	521 bp upstream
Rr543275	regulatory region 543275	762 bp distal
Rr543276	regulatory region 543276	898 bp distal
Rr543277	regulatory region 543277	583 bp proximal
Rr543278	regulatory region 543278	857 bp proximal
Rr543279	regulatory region 543279	1471 bp proximal
Rr543280	regulatory region 543280	1810 bp proximal
Rr543281	regulatory region 543281	1913 bp proximal
Syvn1	synovial apoptosis inhibitor 1, synoviolin	1374 bp upstream
Tssr154538	transcription start site region 154538	902 bp upstream
Tssr154539	transcription start site region 154539	1427 bp upstream
Tssr154540	transcription start site region 154540	1819 bp upstream
Tssr154541	transcription start site region 154541	1853 bp upstream
Tssr154542	transcription start site region 154542	1879 bp upstream
Tssr157816	transcription start site region 157816	301 bp upstream
Tssr157817	transcription start site region 157817	1746 bp downstream