rs37573200 SNP Detail

Summary

• ID
  rs37573200
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:159221492 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCTGAAGTA TGTGGATTAT
  TAACTTGATT TTTTTATCCA AATATGCAAA TGAATAAAAG TATTACTTTT CAAAACTTAG
  AATTTAAATA TGCATTATGA TTTTTAATAA TTGCTTTTGG TACAGATTTA GTACAGTATA
  AAGAAAGAAG TTATACCTTT TAAGTCATCA CTGTAGTTTG AGATTTTTAT TGGACTCCTC
  Y
  CAATTTTGTT GAGTAAGTAT ATAGTAAAAG TAAATAGTAA ATATAATCCT TGAATTGTTT
  TAAGAGAAAA ATAAAGTACT CTTATGTCTT TGTTTGTTGC AAGTCATGTT CTTTTCCTCT
  TATTTTATAA AGAAAACCAT TGTTTATACT CTCTTTAGCC TGCAAACCAT TTTAAGTTTG
  CCATCCATAG AAGAACTCTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51676421	NES14641268	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37573200					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51676421	NES14641268	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:159221492 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Depdc1a	DEP domain containing 1a			Intron
				Noncoding-Transcript-Variant
Rr588123	regulatory region 588123			1839 bp proximal