rs37574250 SNP Detail

Summary

• ID
  rs37574250
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:109686022 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATACTGGTAC CCCTGCCCTC
  TGGAGTGGTA GATGTAAGGC GGCACTTCAG ACCCCTTTTC CCTAGTGAAC TTCTCTTTAT
  GGCTAACATT CTCTGGTAGC CTCCTCATGG CATCAAAATT GCCTTTGAGT GTGGTTGTTT
  GAGCAGGGCC CTTTGGTGGC TCTCTTGTGA GAGTGGGAGG GAGGATACAA TCCAGAGAGT
  R
  TGAGAACACC TCATCCATCC ATCTCCCCTG GAGGGTTTCC GAAGCTGAGC CAGTACAAGA
  TATGGGATCA CTCTTAGGCA ACCCTTTGCT AGGATACTAG CTATTTCTTT CTTTGCTCAA
  GTTGGAATAA AAGCTTTGTT TATACTTACG TGGCTCAACA ACCATAGCGC ATCAAAACCC
  AGTGCAAACT CCATCTAAGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51052955	NES14374727	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	G	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37574250					SNP	A	A	A	A	A	A	A	A	G	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51052955	NES14374727	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:109686022 () rs orientation: forward

Symbol	Name	Function Class
Gm59461	predicted gene, 59461	517 bp downstream
Gm60279	predicted gene, 60279	971 bp downstream
Mir495	microRNA 495	772 bp downstream
Mir667	microRNA 667	418 bp upstream
Mirc6	microRNA cluster 6, including Mir379 through Mir544	within coordinates
Mirc36	microRNA cluster 36, including Mir379 through Mir3072	within coordinates
Tssr115176	transcription start site region 115176	766 bp downstream