rs37574977 SNP Detail

Summary

• ID
  rs37574977
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:61229853 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACAAACATA TTTTCTCTTC
  TCTCTCCGCC TAGGTTACAT ATTACCTCTT TCAACAGCGT GACTCCCAAA TAACTCACAT
  AGCTGCAGCT GGAGCGCTTA GGTGTGCTCT GACGCTCACG CTCGGCTCTT TGCAAGCGTC
  TCTGCTCCTT CTCCTAATCA ATAAACCCAC CCATCTTGCT TCGTTTTGCC CCGTTCCAAA
  R
  TTATTTTCTG CTTCAGTGTC AACTAAAAAA TCCTGTCTGC ATCTACATGG AGATCCCCGA
  GCTGCTGATG GAGAATCCCC AGACCGCACA GCTACACCAC GGCACACCGA GCTGATTTCC
  ACTGCTGATG ACAGTATGAG TCTTCCAACT CGGCTTCTTC CTCTATTGCC TATTCTTGCC
  CCTTCGTTTT TCTCTTCTCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50414446	NES13454346	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	A	A	A	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37574977					SNP	G	G	G	G	G	G	G	G	A	A	A	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50414446	NES13454346	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:61229853 () rs orientation: forward

Symbol	Name	Function Class
Tssr151399	transcription start site region 151399	117 bp downstream
Tssr151400	transcription start site region 151400	86 bp downstream
Tssr151401	transcription start site region 151401	63 bp downstream
Tssr151402	transcription start site region 151402	6 bp upstream
Tssr151403	transcription start site region 151403	30 bp upstream