rs37577513 SNP Detail

Summary

• ID
  rs37577513
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:30510719 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGGCCTTGG TACATACATG
  CCTTTAATCC CAGCAATCGA GAGGCGGGGG CAAGTGCCTC TGGAGTTCCA AAGCTAGCCA
  TAATGACATT GTCTCAAGAT AGTAACTAAA TATCAAGATT AAACAGAAGA AAATGAAGTT
  TCATTGTGGT AGTGCATAGT GTATGCTCTT AAAGAGCTAA TAGGTTTTTA GGTTTTTTTT
  W
  AAATCATGTT TATATTGTCT TAGTACAATG TTTGGATCTG GACATAGATT TGGAGATGAA
  CTAACTTGAC AATTGTTCCA AGAGAACAGG TTCAATTCTG TCAGTATACA GTCAAATCCA
  AAATGACAGC TCATTTCTCC ACATGTAAGT CTATCTAAAA AGGCCCAAAG ATTTATTTAT
  TATTGTACAT AAGTACAATG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51572148	NES14860676	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	T	A	A	A	T	A	A	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37577513					SNP	A	A	A	A	A	A	T	A	A	A	T	A	A	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51572148	NES14860676	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:30510719 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17257	CpG island 17257	788 bp distal
Rr134712	regulatory region 134712	119 bp distal
Rr146079	regulatory region 146079	118 bp distal
Rr379134	regulatory region 379134	19 bp downstream
Ssmem1	serine-rich single-pass membrane protein 1	within coordinates
Tmem209	transmembrane protein 209	933 bp upstream
Tssr55341	transcription start site region 55341	872 bp downstream
Tssr55342	transcription start site region 55342	831 bp downstream
Tssr55343	transcription start site region 55343	1563 bp upstream
Tssr55344	transcription start site region 55344	1574 bp upstream
Tssr55345	transcription start site region 55345	1602 bp upstream
Tssr55346	transcription start site region 55346	1620 bp upstream
Tssr60120	transcription start site region 60120	987 bp upstream
Tssr60121	transcription start site region 60121	963 bp upstream