rs37578668 SNP Detail

Summary

• ID
  rs37578668
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr9:40367344 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCGCT TGCTCTCTCT GCCGGTGTCT
  Y
  TGCCTTAGCG GGACTCGGCG GCCCC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss50677583	NES14010802	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C		T	C	C	T		C
ss322916245	CHEV_9_40263633	CHEVERUD	SCREENING_POP	f	SNP										C					C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs37578668					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50677583	NES14010802	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:40367344 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gramd1b	GRAM domain containing 1B			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
Rr676839	regulatory region 676839			623 bp distal
Rr676840	regulatory region 676840			within coordinates
Rr676841	regulatory region 676841			192 bp distal
Tssr84449	transcription start site region 84449			727 bp downstream
Tssr84450	transcription start site region 84450			138 bp downstream
Tssr84451	transcription start site region 84451			1607 bp upstream
Tssr84452	transcription start site region 84452			1635 bp upstream
Tssr88934	transcription start site region 88934			664 bp upstream
Tssr88935	transcription start site region 88935			613 bp upstream
Tssr88936	transcription start site region 88936			592 bp upstream
Tssr88937	transcription start site region 88937			528 bp upstream
Tssr88938	transcription start site region 88938			271 bp upstream
Tssr88939	transcription start site region 88939			236 bp upstream
Tssr88940	transcription start site region 88940			204 bp upstream
Tssr88941	transcription start site region 88941			71 bp downstream
Tssr88942	transcription start site region 88942			89 bp downstream
Tssr88943	transcription start site region 88943			104 bp downstream
Tssr88944	transcription start site region 88944			147 bp downstream
Tssr88945	transcription start site region 88945			182 bp downstream
Tssr88946	transcription start site region 88946			264 bp downstream
Tssr88947	transcription start site region 88947			292 bp downstream
Tssr88948	transcription start site region 88948			339 bp downstream
Tssr88949	transcription start site region 88949			1424 bp downstream