rs37580230 SNP Detail

Summary

• ID
  rs37580230
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:68791424 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAACTTTGA CCCGCTCAGA
  GAGTTTGCTG ACATCATCTG CCCCACTTAC CCCCACATCA TCACCTTTGA GCTGAGATCT
  GGAACTTTCT TTGATGTCAT CGGCCTTGTC TTACCCTGAC TGTTTCCCTT CAGGAATATT
  CTCTTGGGTA TGATATCAAT CCCTGCCTTA GTGTCTCATT AACATTTCTT GACTAGTCAC
  S
  TAAGACAACT TAATGCCTAG GCTTCGAAAT GTGTATGGTT AATGCCTCAA AACGCCCAGT
  TAACCTTATG TAAACCTGTA TCAGCTATGG GGTACGCTGG TGAAAGTGAG ATTGGGTAAA
  ACAAACATTC CCATTTAGTA AAAGGAGCGT GTTCTTGTCA TCATCATCAA GAAATTCTAA
  CCATCAGATG TGTTTTCCAG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50732146	NES14251868	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	G	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37580230					SNP	C	C	C	C	C	G	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50732146	NES14251868	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:68791424 () rs orientation: forward

Symbol	Name	Function Class
D9Mit158	DNA segment, Chr 9, Massachusetts Institute of Technology 158	1874 bp distal
Rora	RAR-related orphan receptor alpha	within coordinates
Rr682079	regulatory region 682079	1559 bp distal
Rr682080	regulatory region 682080	59 bp distal
Rr682081	regulatory region 682081	297 bp proximal
Tssr85829	transcription start site region 85829	1293 bp downstream