rs37581460 SNP Detail

Summary

• ID
  rs37581460
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:92422596 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGCCATAAT ACAGAGTTCC
  ACAGTTTGGG TACAGGAAGC AGCCACAGGA AAGTTGGCCA GTGATAAAAA GCTTGAACCA
  GGGCATCAAG AGGTATGTTA CTTAAGCAGG AAAGAATGAA TGGAAGAAGG CAGAGAAAAT
  GTGAAGAAAA ATATAACAGT CCTCTAGGTT GGTGCTAGTG AGAGCAGAGA TTGACAAAAA
  W
  CTGGAGCCAT GTAAGTAAGA GGATCATTAA TGAAGATAAA GAAACTAGGT GTAAGATCTG
  GATTTGATGA GCTAAAGAAG CTGAGTGTTT GCCATGGGAA GTAGATATTT GTGGAGTAGA
  CAACTCCAGC CTACAGGAGG GCTGGAAACC CGAGAGGGCT GGAAGGATTT GGTTTCAGGT
  TGTTACTGAA GCGTCTGGCT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	CAST/EiJ	FVB/NJ	KK/HlJ	WSB/EiJ
ss52036455	NES15053651	PERLEGEN	MM_PANEL2	f	SNP	A	T	T	A
SNP Consensus Information
SNP					Consensus Type	CAST/EiJ	FVB/NJ	KK/HlJ	WSB/EiJ
rs37581460					SNP	A	T	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52036455	NES15053651	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:92422596 () rs orientation: forward

Symbol	Name	Function Class
B430319G15Rik	RIKEN cDNA B430319G15 gene	within coordinates
Cpgi22147	CpG island 22147	1314 bp proximal
Gm37545	predicted gene, 37545	460 bp upstream
Plod2	procollagen lysine, 2-oxoglutarate 5-dioxygenase 2	1680 bp upstream
Tssr86520	transcription start site region 86520	1712 bp upstream
Tssr86521	transcription start site region 86521	1887 bp upstream