rs37586303 SNP Detail

Summary

• ID
  rs37586303
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:24515288 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCTGCCAGG GCACCGCCCC
  CGCGCAGTGG GAAAGGAAAC AGCCAGCAAG AGCAAAAGCA GAGGAGCCAG AAGTAGAGAT
  TGTTTGGCGC CAGGAACTGA GACCTAAAGA TTATTCCAAG TTAACCTTTC TCCGGGAGTT
  CTCTCACACT TCTGAAAAGG CAGTCCTGTA AACAGTCTAA GCTCACGGGT TACCTTCTTT
  W
  AAAAATGCAA ATGTGAACAC TGAGAGACAG GGATTATAAA GGAACACAAC TGTGTGCTAC
  CTAAGTTCTT TTGTCCAGTT AAGATCTTTC CTTTAGCTTC CTGGCAGCCA GAAAGAACAG
  GAAGAATTAA TAACTACTCT GCTTTTATAA GTCAGGAGAA GCAAAGCTTT TTCTATCACC
  ACGTTCTTTA GTCTTAAAAT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss51254447	NES13801387	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	A	T	T	T
SNP Consensus Information
SNP					Consensus Type	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs37586303					SNP	T	T	T	T	T	A	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51254447	NES13801387	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:24515288 () rs orientation: forward

Symbol	Name	Function Class
Gm67852	predicted gene, 67852	within coordinates
Iqub	IQ motif and ubiquitin domain containing	222 bp upstream
Rr627228	regulatory region 627228	233 bp distal
Rr627229	regulatory region 627229	178 bp distal
Rr627230	regulatory region 627230	within coordinates
Rr627231	regulatory region 627231	1004 bp proximal
Rr627232	regulatory region 627232	1115 bp proximal
Tssr59986	transcription start site region 59986	206 bp upstream