rs37586547 SNP Detail

Summary

• ID
  rs37586547
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:32490069 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGACACAGGA AAAGAAAGGC
  TCAGAAAGCA AAGTTGGAGG ATGCTTCCAT CCCCAAACAC CTAAAGATGC CTCACCAGCT
  CCCACAGTGT CTATATCCAA CACAGCCCAG GCACTGACAC TTGCAAATGT TTCTATACTC
  ATAGCCACTC AGTCATAGGA GACCACTCCT GGCCGTTCCC AGCCTCTCTT CTGACATGAA
  Y
  ACAGCCAGTC TTCCTCGCCC ATGGAGAAGC AGAAGCACCA TTGAGTTCTC TGATAGTTGC
  AATCAGAAGG CTCTGGATTC ATGAGTTAGG CAAGTGACCC AGGGTCAGAC CACTCTCAGC
  TCTGAGTTCA GGAGAAGAAA TATAGGTGTC AGGAAATGGA AAAGGCCATA TAAGCTCAAT
  AAATATCTTC TGATAGGCAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51579744	NES14853449	PERLEGEN	MM_PANEL2	f	SNP	T		T	T	T	T	T	T	T	T	T	C		T	T	T	T
ss133100277	ENSMUSSNP1645565	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T						T				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37586547					SNP	T	T	T	T	T	T	T	T	T	T	T	C	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51579744	NES14853449	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:32490069 () rs orientation: forward

Symbol	Name	Function Class
Plxna4	plexin A4	Intron
Plxna4os1	plexin A4, opposite strand 1	within coordinates
Rr628120	regulatory region 628120	1735 bp distal
Rr628121	regulatory region 628121	748 bp distal
Tssr55474	transcription start site region 55474	1964 bp downstream
Tssr55475	transcription start site region 55475	1944 bp downstream