rs37586969 SNP Detail

Summary

• ID
  rs37586969
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:68940200 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCAGAACTC GTAGAAAAAG
  GCAGGTATGG CAGCACATGC CTGTAACCCA AGTACTTTGT TGGGGAAAAT GGAAATGAGC
  AGATACCCCC CCAGTGTCTC TCTCTCTCTC TCTCTCTCTC TCTCTCTCTC TCTCTCTCTC
  TCTCTCTCAC ACACACACAC ACACACACAC ACACACACAC ACACACACAC ACACTCACCA
  R
  TGTGAAGCTC TAGAATATAG GGACAGAGGA ACATTCTGTG AATGCCTTGG GGCTTTGCAG
  TCACTCAAAT TACCAGTGAC TCTAATTAAC TTCCCAGGAT TCTGGAACAG TCTTTATCTG
  CATTGTAAAA AAGGAATGTA TCCCTCAGGG AACATGTCAG GCTGAGACCT TCCTGGGTGA
  GTTTTCTAGA ATAGTAGAGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss50730540	NES14249531	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	A	G	G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs37586969					SNP	G	G	G	G	G	G	G	G	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50730540	NES14249531	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:68940200 () rs orientation: forward

Symbol	Name	Function Class
Rora	RAR-related orphan receptor alpha	within coordinates
Rr682107	regulatory region 682107	1206 bp proximal
Tssr90367	transcription start site region 90367	1369 bp downstream
Tssr90368	transcription start site region 90368	1422 bp downstream
Tssr90369	transcription start site region 90369	1536 bp downstream