rs37587861 SNP Detail

Summary

• ID
  rs37587861
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:49025676 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCTATGTGG TCTGTCATTT
  TGGATGTTAT GTAAATGGGT TCACATCATG TGCTGTGTTC TTTGCCCCTC TTTGCTAAAT
  AACCACAGAA AGCTTTCAGT TACTGTGCAT GGAAATCTCT CACACCTGAC CGGGTGTCGC
  ACAGTGTCAC AGGGTGTACT GATAAACACC CACAAGCTTG TTGGTGAGCA ACGAAGGGAT
  Y
  GCAAGTCCAG TTACAAATGT AGCAGTACTG GGCTAGTCCA GACATACAGC TTCATCTCAC
  TCTAAACCCC CTCCCTCCCC GCTCTCCTCC CTCCTCCTAC ATTTCCCTTT CCCCAGCCTC
  TTATGTAGCC CAGGCTAGCT TCAAACTCAC TATTATCGTC TGGTGATCCT CTAGCCTTCA
  CCTTCTAATG GCTGGGATTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51658449	NES14824143	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37587861					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51658449	NES14824143	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:49025676 () rs orientation: forward

Symbol	Name	Function Class
Gm56981	predicted gene, 56981	within coordinates
Gpnmb	glycoprotein (transmembrane) nmb	within coordinates
Tssr56342	transcription start site region 56342	1989 bp downstream
Tssr56343	transcription start site region 56343	1443 bp downstream
Tssr56344	transcription start site region 56344	1419 bp downstream
Tssr56345	transcription start site region 56345	1400 bp downstream
Tssr56346	transcription start site region 56346	1347 bp downstream
Tssr56347	transcription start site region 56347	1329 bp downstream
Tssr56348	transcription start site region 56348	1306 bp downstream
Tssr56349	transcription start site region 56349	985 bp downstream
Tssr56350	transcription start site region 56350	956 bp downstream
Tssr56351	transcription start site region 56351	929 bp downstream
Tssr56352	transcription start site region 56352	910 bp downstream
Tssr56353	transcription start site region 56353	842 bp downstream
Tssr56354	transcription start site region 56354	828 bp downstream
Tssr56355	transcription start site region 56355	804 bp downstream
Tssr56356	transcription start site region 56356	786 bp downstream
Tssr56357	transcription start site region 56357	774 bp downstream
Tssr56358	transcription start site region 56358	756 bp downstream
Tssr56359	transcription start site region 56359	725 bp downstream
Tssr56360	transcription start site region 56360	678 bp downstream
Tssr56361	transcription start site region 56361	1140 bp upstream
Tssr56362	transcription start site region 56362	1368 bp upstream
Tssr56363	transcription start site region 56363	1655 bp upstream
Tssr60849	transcription start site region 60849	1380 bp upstream
Tssr60850	transcription start site region 60850	1327 bp upstream
Tssr60851	transcription start site region 60851	865 bp upstream
Tssr60852	transcription start site region 60852	836 bp upstream
Tssr60853	transcription start site region 60853	824 bp upstream
Tssr60854	transcription start site region 60854	807 bp upstream
Tssr60855	transcription start site region 60855	762 bp upstream
Tssr60856	transcription start site region 60856	735 bp upstream
Tssr60857	transcription start site region 60857	634 bp upstream
Tssr60858	transcription start site region 60858	1697 bp downstream
Tssr60859	transcription start site region 60859	1739 bp downstream
Tssr60860	transcription start site region 60860	1753 bp downstream
Tssr60861	transcription start site region 60861	1771 bp downstream