rs37590226 SNP Detail

Summary

• ID
  rs37590226
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:65506932 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAAAGAAAG AAGGAAGGAA
  GGAAGGAAGG AAGGAAGGAA GGAAGGAAGG AAGGAAGGAA AGAAAGAAAG AAAGAAAGAA
  AGAAAGAAAG AAAGAAAGAA AGAAAGAAAG AAAGAAAAAA AGAATTAACC CAACCCACGT
  CTGTTCTCTT AACATTGCTA AATTCCTTTT AAATATATTG TATCTCAGGC TTAGTATTCC
  Y
  GAGTTCTTTA ACTCATTAGT GAGTTGAACA AAACCTTTGA TGGCTAATTT TACATCTGCA
  CAGAGATCAC TTTAACTTTT GTTTCTTTTC AAAAGATTTG TCTTTATTTT CACTTACATG
  TTTGTATCTG ACCCTGTACG CAGGAGTGTC AATGCCTTAG GAAGCCACAG GGATGCCCCT
  GGAGCTGTGT TAAAGTTGTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50444182	NES13447383	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	T	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37590226					SNP	C	C	C	C	C	C	C	C	C	C	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50444182	NES13447383	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:65506932 () rs orientation: forward

Symbol	Name	Function Class
Alpk2	alpha-kinase 2	within coordinates
Tssr151596	transcription start site region 151596	1809 bp upstream
Tssr153695	transcription start site region 153695	1540 bp downstream