rs37590297 SNP Detail

Summary

• ID
  rs37590297
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:6918708 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AATAA TCCGGATTGG GAGGCTTCTT
  Y
  CTCTGTCCTC AAGATTCCAG ACGTG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss50594184	NES13645572	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs37590297					SNP	C	C	C	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50594184	NES13645572	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:6918708 () rs orientation: forward

Symbol	Name	Function Class
Bad	BCL2-associated agonist of cell death	521 bp upstream
Cpgi10534	CpG island 10534	within coordinates
Gm59107	predicted gene, 59107	1332 bp downstream
Gpr137	G protein-coupled receptor 137	within coordinates
Rr405833	regulatory region 405833	22 bp upstream
Rr405834	regulatory region 405834	360 bp upstream
Rr405835	regulatory region 405835	1064 bp upstream
Rr543510	regulatory region 543510	within coordinates
Rr543511	regulatory region 543511	524 bp proximal
Rr543512	regulatory region 543512	1100 bp proximal
Tssr154697	transcription start site region 154697	535 bp upstream
Tssr154698	transcription start site region 154698	561 bp upstream
Tssr154699	transcription start site region 154699	1203 bp upstream
Tssr154700	transcription start site region 154700	1253 bp upstream
Tssr154701	transcription start site region 154701	1283 bp upstream
Tssr157902	transcription start site region 157902	88 bp downstream
Tssr157903	transcription start site region 157903	481 bp downstream
Tssr157904	transcription start site region 157904	1066 bp downstream