rs37590396 SNP Detail

Summary

• ID
  rs37590396
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:97872805 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAGAAGCTT GCAGAAAGAT
  GCAGAGAATC ATCTAGGTTG CTTGTATCAA TGACCCCTGG GGACTTAGTC CCCTCCCCTT
  TCTTTCTCCT TTCCACCCCA CTTTCCAGAA GGAGCCTCCT CCAACTCCCC CACACTGAGA
  TCTCAGCGCG CCCTGTTTTT CTCCAGCCTG CTGGAGAGGT GCGCTCCGTG AATATTCTCA
  Y
  GAACAAGGTC GGTCGTCCCT CTGGTTCCTC AGACTTCCCA AACAATGGAT CCATGTCTGA
  GTGCAGTGTC CCTCAAAGGC TTGCTCCCAG GGTGATGCTC TTAGGTGGTG GAACCTGGAG
  AGGTAGGGCC TAGGGGTGGT CCTCAGGTCA CGGGGACAGG TTCTCAGAAG GGTCTGTAGG
  ACACTGGTCT CTCCCTCCTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51763587	NES14551314	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	T	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37590396					SNP	C	C	C	C	C	T	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51763587	NES14551314	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:97872805 () rs orientation: forward

Symbol	Name	Function Class
Col2a1	collagen, type II, alpha 1	678 bp downstream
Rr508999	regulatory region 508999	1131 bp distal
Rr509000	regulatory region 509000	1887 bp proximal
Tssr4707	transcription start site region 4707	1964 bp downstream
Tssr132910	transcription start site region 132910	679 bp upstream
Tssr136189	transcription start site region 136189	744 bp downstream
Tssr136190	transcription start site region 136190	775 bp downstream
Tssr136191	transcription start site region 136191	988 bp downstream
Tssr136192	transcription start site region 136192	1094 bp downstream
Tssr136193	transcription start site region 136193	1136 bp downstream
Tssr136194	transcription start site region 136194	1184 bp downstream
Tssr136195	transcription start site region 136195	1200 bp downstream
Tssr136196	transcription start site region 136196	1219 bp downstream
Tssr136197	transcription start site region 136197	1232 bp downstream
Tssr136198	transcription start site region 136198	1754 bp downstream
Tssr136199	transcription start site region 136199	1800 bp downstream
Tssr136200	transcription start site region 136200	1818 bp downstream
Tssr136201	transcription start site region 136201	1874 bp downstream
Tssr136202	transcription start site region 136202	1928 bp downstream