rs37596202 SNP Detail

Summary

• ID
  rs37596202
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:42773934 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCTCCGGTA CCCTGAAAGA
  CACTCTGTTA TCTGTCTCCT TTAATCATGA AGGGAGGGGC AAAAAATTAA TTGTCCTAAA
  TCCTTCTCTG TATATAAGCT ATAGTTCCCT CCGCTTGAGG TGACTGTCAC CACCTTCTGT
  CTTACTATGA GCTCCCAAGT CTGTACACAA GTTCAGGATG AACTGAAAGC TGCCCGTTCA
  Y
  CTCACTGTGT AACCAACTCA GCAGTCAGCT TGCCTTTTCT CACCCGGGTG AACAGCGCTA
  CCTTGAGTTC CATCTCCTGG ATGTTCTGGG GAAGTCCACA GCTACACACC ATCTGCACTG
  TGGACTCCGG GGCCCAGTTT TACAAAGCTG CCCTGAGCAC ACACCACACA GAGCACTCGG
  CAACACACAT GGCCTTCACT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss52008971	NES15031348	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs37596202					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52008971	NES15031348	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:42773934 () rs orientation: forward

Symbol	Name	Function Class
Gm55338	predicted gene, 55338	509 bp upstream
Gm67530	predicted gene, 67530	within coordinates
Grik4	glutamate receptor, ionotropic, kainate 4	within coordinates
Rr677286	regulatory region 677286	1109 bp distal
Rr677287	regulatory region 677287	764 bp proximal