rs37596211 SNP Detail

Summary

• ID
  rs37596211
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:68597809 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAAAGGCTT GTGGTTATGG
  AGATGGTTGC CTCAATAGGA GGTGGGCTCT GACAGCTGGA TGGGTCTGGG GGAAGCCAGA
  CACATGGCAG GCTCCAAGTC AATGACCAAG CAGGGCCTCC TCTCTCTGCA CACCCAGTGA
  GGCTGTCTTG GGGTAGAAAG GAGTTAAGTT CCAAGGAATC TCCTACCCCA AACCTCCAAA
  W
  TACAGCTTGT CATTGCAAGC TTCGAACTCT CACACTTTCT TTGCAGGAGC TGGGACTACG
  CTCAATCAGC CTGGGGAGTT ATCAGGTGTT AGCCTGTTAC CCCACTGGGA ATCCCTTCAG
  CCACCTTTGT TCTCCATCTT GAATGGAGCC ATGGGTTGGC CATATCCTGC CACCTACTCC
  CTTGGATCTG AGCTGGACCC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss51541973	NES14683673	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	A	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs37596211					SNP	T	T	T	T	T	T	A	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51541973	NES14683673	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:68597809 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13252	CpG island 13252	662 bp proximal
Gm66274	predicted gene, 66274	within coordinates
Il12a	interleukin 12a	168 bp upstream
Rr578059	regulatory region 578059	786 bp proximal
Tssr29479	transcription start site region 29479	853 bp upstream
Tssr29480	transcription start site region 29480	891 bp upstream
Tssr29481	transcription start site region 29481	896 bp upstream
Tssr29482	transcription start site region 29482	954 bp upstream
Tssr29483	transcription start site region 29483	1020 bp upstream
Tssr29484	transcription start site region 29484	1151 bp upstream
Tssr29485	transcription start site region 29485	1448 bp upstream
Tssr29486	transcription start site region 29486	1469 bp upstream
Tssr29487	transcription start site region 29487	1579 bp upstream
Tssr29488	transcription start site region 29488	1597 bp upstream
Tssr33509	transcription start site region 33509	1728 bp downstream