rs37596565 SNP Detail

Summary

• ID
  rs37596565
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  126
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:29230971 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGATTAAAAC CACCACCCAC CGGGCTTCAT TTGTTTCTTT
  TAGTGTCTTT TCCTTTGTAA TTTGAAGGTG TCTTGAGTAA GGTGTCTTGA GTGTGAAAAG
  Y
  AAACATATTT TTTTTTCTCT ACTTTACCCA GATAGGCTAT TCTTGAAAGA TGGGATCCCT
  TTCTGGCAAA ATAGAGAAGA CCATTGGCTT TGGAGTTAGA                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50753215	NES13566093	PERLEGEN	MM_PANEL2	f	SNP	C	T	T	T	C	T	T	T	T	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37596565					SNP	C	T	T	T	C	T	T	T	T	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50753215	NES13566093	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:29230971 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10735	CpG island 10735	1116 bp distal
Gm41829	predicted gene, 41829	1246 bp upstream
Jak2	Janus kinase 2	within coordinates
Rr405910	regulatory region 405910	275 bp upstream
Rr546088	regulatory region 546088	1733 bp distal
Rr546089	regulatory region 546089	1948 bp distal
Rr546090	regulatory region 546090	1120 bp distal
Rr546091	regulatory region 546091	within coordinates
Rr546092	regulatory region 546092	399 bp proximal
Rr546093	regulatory region 546093	1169 bp proximal
Tssr155780	transcription start site region 155780	1906 bp downstream
Tssr155781	transcription start site region 155781	1717 bp downstream
Tssr155782	transcription start site region 155782	1704 bp downstream
Tssr155783	transcription start site region 155783	1670 bp downstream
Tssr155784	transcription start site region 155784	1258 bp downstream
Tssr155785	transcription start site region 155785	1129 bp downstream
Tssr155786	transcription start site region 155786	1086 bp downstream
Tssr155787	transcription start site region 155787	981 bp downstream
Tssr158749	transcription start site region 158749	1466 bp upstream