rs37599588 SNP Detail

Summary

• ID
  rs37599588
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:123155320 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTTCCAGCC AGGGCCAGGT
  AGCTCCAAGC CAAAGGGAAT GAGAAACAAA GCCACACAAT GTTTCTTTGG AAGTTAAAGA
  GAAAGTTTTA CACTTTAGGG GAGGGGGTAT CACGTGTTTA TGGCTTGTAA ATTGTAACTT
  CTTAGACCCC AGGAGAGGTG AGGGTCAGAT AGGGGGTCCT TTCCTACCCT CTCCTTTTCT
  M
  GTTCTCCTCT GCAGAAGGTC AAGCCTCCAC TAAAAACATG GAGGAGGTTA GAAGGCTGGG
  GTAGCTAAAA CCGGTGGATG GGCATGGGTG CATCCACACT GTCTGTCCTG GGAATCTTGT
  TTGCACAGCC TGGGTAGAGT AGGCTCCTCA ACTCCAGGAT GCCATCCTTT AAATTGTGCA
  GACTTACGAA GGGTTGAGGT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	PWD/PhJ
ss51195020	NES13812735	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	PWD/PhJ
rs37599588					SNP	C	C	C	C	C	C	C	C	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51195020	NES13812735	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:123155320 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16567	CpG island 16567	1357 bp distal
Orai1	ORAI calcium release-activated calcium modulator 1	within coordinates
Rr620048	regulatory region 620048	1840 bp distal
Rr620049	regulatory region 620049	342 bp proximal
Tssr48745	transcription start site region 48745	1958 bp downstream
Tssr48746	transcription start site region 48746	1922 bp downstream
Tssr48747	transcription start site region 48747	1017 bp downstream
Tssr53184	transcription start site region 53184	1347 bp upstream
Tssr53185	transcription start site region 53185	1300 bp upstream
Tssr53186	transcription start site region 53186	1277 bp upstream
Tssr53187	transcription start site region 53187	300 bp downstream
Tssr53188	transcription start site region 53188	1687 bp downstream
Tssr53189	transcription start site region 53189	1713 bp downstream