rs37601597 SNP Detail

Summary

• ID
  rs37601597
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:109711437 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTCATTTAC ATTTCCAATG
  CTATACCAAA AGTCCCCCTT ACCCACCCAC CCCCACTCCC CTACCCACCC ACTCCCCCCC
  TTTGGCCCTG GCGTTCCCCT GTACCGGGGC ACACAAAGTC TGCGTGTCCA ATGTAGCCTG
  CACTTCTTCA TGTTTCCTCC AACTTAACAC TCTGGCTCTG TCAGACTCCT GTGAGCTTAC
  Y
  GTAGAGGCTT GACCTAGAGT CTCAAGGACC CCAGAAAGTA CCTGATCACA CCCAGTAGGA
  GCCTTTGAAA GACAGGCTAT AGATTTTTGG TATTTAGTAA GGCTCCCCAG GGTGGCAAAG
  AGCTCTTTCT GATTGGGCTT GCTCCCCATT GGAGCAAGTA GCACCCTCAC CCTGGCAACT
  CCACCCTGCA TGCTTTTTCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51052557	NES14373901	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37601597					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51052557	NES14373901	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:109711437 () rs orientation: forward

Symbol	Name	Function Class
Gm54371	predicted gene, 54371	1766 bp upstream
Mir369	microRNA 369	1507 bp downstream
Mir409	microRNA 409	1767 bp downstream
Mir410	microRNA 410	1208 bp downstream
Mir412	microRNA 412	1635 bp downstream
Mirc7	microRNA cluster 7, including Mir382 through Mir3072	within coordinates
Mirc36	microRNA cluster 36, including Mir379 through Mir3072	within coordinates
Mirc46	microRNA cluster 46, including Mir409 through Mir410	1208 bp distal
Mirg	miRNA containing gene	within coordinates
Rr472795	regulatory region 472795	771 bp proximal
Tssr115184	transcription start site region 115184	1214 bp downstream