rs37603530 SNP Detail

Summary

• ID
  rs37603530
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:55241623 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGGGTCAGA CCTGCAGGTC
  TCTGAGGTGT GGCACCGGTT TGTTTTTCCT GGTCTTTATA GCAGGGGTGG GTGGGTATGG
  GGTGCTCTCT GCACAAAGAA GGAATCCTAA GGTAGGCTAG CACTCTAGTG AAGTCTTCAC
  CTTGAACTTC CTGTCAATCC TTGGAGGGAT CAAGGCCGGG AAAATGCTAC TTGATTCTGC
  S
  TGTCGTGAGG TTGCAGCGGG AGTGGGGGAG AGGGAGGGGG CAGAACCTGT CATCTCTCTT
  CCAATTCTGA GACCGAGGTC TCCTTGTGTC CCTGGGAGAC CAGAACCTCA AAGGGTGATC
  GATTAAGACA ACTGTGAACC CGGATAATGC TGAGGTGTAA GAGGGGTCAC AGAACACATT
  TCATCCTTAA ACTTGGCGGG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss51221525	NES14297447	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	C	G	C	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs37603530					SNP	G	G	G	G	G	G	C	G	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51221525	NES14297447	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:55241623 () rs orientation: forward

Symbol	Name	Function Class
Acsl5	acyl-CoA synthetase long-chain family member 5	within coordinates
Cpgi11077	CpG island 11077	824 bp proximal
Rr363563	regulatory region 363563	422 bp distal
Rr363564	regulatory region 363564	within coordinates
Rr370538	regulatory region 370538	693 bp upstream
Rr406037	regulatory region 406037	1444 bp upstream
Tssr5558	transcription start site region 5558	1348 bp downstream
Tssr157068	transcription start site region 157068	1288 bp downstream
Tssr157069	transcription start site region 157069	1247 bp downstream
Tssr157070	transcription start site region 157070	1228 bp downstream
Tssr157071	transcription start site region 157071	450 bp upstream
Tssr157072	transcription start site region 157072	502 bp upstream
Tssr157073	transcription start site region 157073	709 bp upstream
Tssr157074	transcription start site region 157074	775 bp upstream
Tssr157075	transcription start site region 157075	790 bp upstream