rs37605219 SNP Detail

Summary

• ID
  rs37605219
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  126
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:127873052 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGCTAGCATA GTTCCATTAC ATAAGACTGA AATAAATTCT
  TGGGGTTTTT CCAACTGAAA TAGAAGTAGT CTGAAGATAG GCTTGAATAC TGGTTAACAC
  R
  TTTTGATAGG GAACTTTAAA AAGAGCTTGT GAGAAGGACG AGAATGGTTT TGCTTGCTGA
  GTCAGCTCTA CAGAATTAAA TGAAGGGTAT CTTAAGGATA                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50944821	NES14145743	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37605219					SNP	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50944821	NES14145743	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:127873052 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2380	CpG island 2380	729 bp distal
Gm66417	predicted gene, 66417	1602 bp upstream
Naca	nascent polypeptide-associated complex alpha polypeptide	within coordinates
Rr224438	regulatory region 224438	within coordinates
Rr385474	regulatory region 385474	within coordinates
Tssr96290	transcription start site region 96290	1845 bp downstream
Tssr96291	transcription start site region 96291	1828 bp downstream
Tssr96292	transcription start site region 96292	1803 bp downstream
Tssr96293	transcription start site region 96293	1663 bp downstream
Tssr96294	transcription start site region 96294	1589 bp downstream
Tssr96295	transcription start site region 96295	1570 bp downstream
Tssr96296	transcription start site region 96296	1548 bp downstream
Tssr96297	transcription start site region 96297	1528 bp downstream
Tssr96298	transcription start site region 96298	944 bp downstream