rs37608511 SNP Detail

Summary

• ID
  rs37608511
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:190795816 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TATAAACAAG GCATCACATT TTGCTTTCAT AGCAAGCTTT
  CAAATCTTGT GTTTTACAAA ACATTTCTTT TGGTAGTTAA GTGCGCAGTA AAGACAAAGT
  Y
  GCTCTCCTGT GGGCCAGCGC AACTTTGCTG GTTGGTATGA GGAATTCTCC AGGAAATGAT
  AATCCTTGAA GTCAGTCATC TGGCTAGGTT TTTGGTCAT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	KK/HlJ	LG/J	PWD/PhJ	SM/J	WSB/EiJ
ss51423906	NES14444365	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	T		T		C
ss320194661	CHEV_1_192887498	CHEVERUD	SCREENING_POP	f	SNP							T		C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	KK/HlJ	LG/J	PWD/PhJ	SM/J	WSB/EiJ
rs37608511					SNP	C	C	C	C	C	T	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51423906	NES14444365	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:190795816 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1216	CpG island 1216	106 bp distal
Nsl1	NSL1, MIS12 kinetochore complex component	within coordinates
Rr29190	regulatory region 29190	within coordinates
Rr396711	regulatory region 396711	446 bp downstream
Tatdn3	TatD DNase domain containing 3	687 bp upstream
Tssr10722	transcription start site region 10722	581 bp downstream
Tssr15751	transcription start site region 15751	732 bp upstream
Tssr15752	transcription start site region 15752	708 bp upstream