rs37610054 SNP Detail

Summary

• ID
  rs37610054
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:8996770 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGATTTCATA CTTAACTTTA
  TATCTCAGAT TGTGCCCAGG AATCCACTTC TTCAAGTCTA CATCTTTATG CCAGCTTTAT
  CAAATAAAAC CCAAAATATA ATACAAAAAA TTCATTTGAA TTAGTCACAA GAATTACAAA
  GGTGAAGTGA TATATGCATT TCATGTGTTT TCAGAAATGA AAATATGCTT GGGAAATTGT
  S
  AATTGCCTTA GGATGAAAGA AGAAAACAAG AAGAGACACA TCTCCCTGCC TTCTAGATAT
  CATAAGGAGG CAACCTTATT AGGGTGTTTT ATATCAGTTT CCAAATTCAA GCAGAGCGTC
  TCGCTCAGAG TCACGCTGCA AGGCAGGACC TATGATATTC ATTATGACTT CACTGAGTCT
  AAGGAGTTTA GGGTTTGCTT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51571819	NES14613457	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	G	C	C	G	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37610054					SNP	C	C	C	C	C	C	C	C	C	G	C	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51571819	NES14613457	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:8996770 () rs orientation: forward

Symbol	Name	Function Class
Ranbp3l	RAN binding protein 3-like	663 bp upstream
Tssr130603	transcription start site region 130603	643 bp upstream
Tssr130604	transcription start site region 130604	657 bp upstream
Tssr130605	transcription start site region 130605	677 bp upstream
Tssr130606	transcription start site region 130606	710 bp upstream
Tssr130607	transcription start site region 130607	1002 bp upstream
Tssr130608	transcription start site region 130608	1033 bp upstream
Tssr130609	transcription start site region 130609	1103 bp upstream