rs37611696 SNP Detail

Summary

• ID
  rs37611696
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:113657496 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGCATGTTT CTGTGGTAGC
  ATAACGCACA CCCACTCTCT CATCCTCTCT AGGACTCTAG TTATTTCATT CTGGGCAGAG
  GGTCACAGAG GCCACAGTGG CCAGAAAAGA ACTAAAGGAT TAAGGGCTGA CACAACCAGG
  ACCCACGGCT TTGGAGATGC AGCCCCAGGT TTATTGACCC TTTTCTGGCT AGTGTGGATG
  K
  TCTCTGGAGC TGAGTGTCCC CAGGTAACCA GGAGCCATGG ACAAAGACTC TCCCAATCCC
  TGCTGGAAAG GTTCAAAGTG ACCAGGCCCT CTTCCTGCTT CACCATCCCA GGCCCCAGCT
  GCAGTTGCCA TCGGCCACAT CCACAGGCAC CCAGATTCTG TCTGCCCAGT CCCCAGTGCT
  GCTCACCTGC CGGGCTCCTC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
ss51794415	NES14722593	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	G	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
rs37611696					SNP	T	T	T	T	T	G	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51794415	NES14722593	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:113657496 () rs orientation: forward

Symbol	Name	Function Class
Tssr48022	transcription start site region 48022	1209 bp upstream
Tssr48023	transcription start site region 48023	1269 bp upstream
Wscd2	WSC domain containing 2	within coordinates