rs37616839 SNP Detail

Summary

• ID
  rs37616839
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  126
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:126165500 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GCATCTAAAG TGACACTTTA TGAAGCTGGA TGGATTAAGC
  CCAAGACAGG CTCAAACAGG AGTATAGAGG AGAGATTATG AAACAATAGC ATCCTGGTCC
  W
  GGCTCTACTA AGCGCTCGCT CCAGCTGGTC CCTCTCTGAC ACAGCCCATA AGCTGTGCCC
  TTGCAGTGAA CTAATTCTGT CTGATTTTTC TTTGACATTC                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	KK/HlJ
ss51820896	NES14712669	PERLEGEN	MM_PANEL2	f	SNP	A	T	A	A	T	A	A
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	KK/HlJ
rs37616839					SNP	A	T	A	A	T	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51820896	NES14712669	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:126165500 () rs orientation: forward

Symbol	Name	Function Class
D5Mit214	DNA segment, Chr 5, Massachusetts Institute of Technology 214	1740 bp proximal
Rr116253	regulatory region 116253	within coordinates