rs37619084 SNP Detail

Summary

• ID
  rs37619084
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:60235238 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGATGGGCA AGCCACACAA
  TATTTAGGCT CCTAAGCAGG CAGCTGGTTG CCAGGGGAGT TTGGTATTCT GGGAAGAAGG
  GAGGGTTGTG GGTGAGGGTT GGAGTGAACC TGGTACCCCA CTCACACTGT GAATGCCCTG
  TCTCTCAGTC TGAGACATGT TGAAATTTGA GAAATGGCAC ACACTTCTGC AGCCAGATAA
  R
  GGACATTTTC CGAGAATCCA GGAAAAACAG GGCCTAGGGA CCCTGCAGAG GAGGTCTTGC
  GGGTTTCAGG GCCCACCACC CCGTGTCTCT CTGCTTACAG ACCCTCTCCC TGGTAACCTG
  ATGGCTGGCA GGCACTGAAT AGTCGACCAT ACCATTCAAA TTCCCAAGGG GGGTGGTGAT
  GGGAGCCCCA GGCCAAGAGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss50866222	NES14170258	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G		A	G	G	A		A
ss323325371	CHEV_10_59862207	CHEVERUD	SCREENING_POP	f	SNP											A					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs37619084					SNP	G	G	G	G	G	G	A	G	G	G	A	A	G	G	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50866222	NES14170258	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:60235238 () rs orientation: forward

Symbol	Name	Function Class
Cdh23	cadherin related 23 (otocadherin)	within coordinates
Gm17455	predicted gene, 17455	405 bp upstream
Rr215449	regulatory region 215449	1038 bp distal
Rr223077	regulatory region 223077	608 bp distal
Rr228097	regulatory region 228097	within coordinates
Tssr93633	transcription start site region 93633	290 bp upstream
Tssr93634	transcription start site region 93634	343 bp upstream
Tssr93635	transcription start site region 93635	390 bp upstream
Tssr93636	transcription start site region 93636	1294 bp upstream