rs37620033 SNP Detail

Summary

• ID
  rs37620033
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:36053625 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTGAAGACT GAGTCAGGCA
  GTCAGACACA CTCCTTAAGT GCAATCCTTT ATCTTGACAA TGTTCTGATT TCTCTATCCC
  ATTTTTCAAA GCTCTTTTTG CTACATCTCA AAACATTTAA ACATGACGAG TAAATTGCCT
  GCCAGGAGAT AATTCACCAA TTAAGACAGC CGCTATTCTC ATGGGTAGAG TCTGACTAAT
  Y
  AAATTCTTTT CTCTGAGGTA TTAGAGGAAT CATGGCTGGT AAAAAGAAAG AAAAAAGAAA
  AGGTAAAATT CTCATGCTGG TAAGAGTTTT AATTTTAAAA ACTATTAGCA GGATGACAGC
  TATAACTAAG CCTTGAGAGG AGAATGACTC TGTGGTATTC TTGGGAACCT AAGGAAATTC
  ACAGGAAGAA AAACAGCACT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss51452910	NES14433132	PERLEGEN	MM_PANEL2	f	SNP	T			T	T		C	C	C	C	C
ss134776677	ENSMUSSNP5758763	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C			C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs37620033					SNP	T	T	C	T	T	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51452910	NES14433132	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:36053625 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13078	CpG island 13078	761 bp proximal
Mccc1	methylcrotonoyl-Coenzyme A carboxylase 1 (alpha)	within coordinates
Mccc1os	methylcrotonoyl-Coenzyme A carboxylase 1 (alpha), opposite strand	437 bp upstream
Rr397641	regulatory region 397641	1078 bp upstream
Rr575296	regulatory region 575296	267 bp proximal
Rr575297	regulatory region 575297	469 bp proximal
Rr575298	regulatory region 575298	1192 bp proximal
Rr575299	regulatory region 575299	1294 bp proximal
Tssr28858	transcription start site region 28858	941 bp upstream
Tssr33012	transcription start site region 33012	1088 bp downstream
Tssr33013	transcription start site region 33013	1141 bp downstream
Tssr33014	transcription start site region 33014	1174 bp downstream
Tssr33015	transcription start site region 33015	1186 bp downstream