rs37622676 SNP Detail

Summary

• ID
  rs37622676
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:8928155 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCCTTCTTG TTATTGTTTT
  TTGTGGTGGT GCTGTAGATC AAAACCCAGA ACCTCATATG TTCTGGTTTA GTGGTTTACC
  GTTGAGCTCC ATCTCTGGCA CAGAAGTGGC TTTATATACG TATTTTCTGA TCTGAAAGCA
  TAATGTGTTT TTAAATAAGG TTAAGTAGCT TGATAGGCCA TTTTCTCCAT TATTAATCTT
  Y
  AGGCCATTAG AGTAAACAAC TGGTCAGGGT AGAGAGGGAG GAAAGAATGG TAATGAAACT
  ACATAGGCAA GGAAAGTGGG AACATTTTCT ATTTCATCCC CCTTCTCCCT CTACTGACAG
  TGGCTCAGGC ACCTCTGAAA CCAAAAACAC CTCGGGGTAC CAAGACACCA ATCAACAGAA
  ACCAGCTGAC CCAGAATCGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50609158	NES13644104	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37622676					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50609158	NES13644104	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:8928155 () rs orientation: forward

Symbol	Name	Function Class
Gm59132	predicted gene, 59132	within coordinates
Mta2	metastasis-associated gene family, member 2	within coordinates
Rr359578	regulatory region 359578	446 bp proximal
Rr363780	regulatory region 363780	1645 bp proximal
Tssr154900	transcription start site region 154900	1279 bp upstream