rs37623054 SNP Detail

Summary

• ID
  rs37623054
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:37525201 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGCTGGCTG AACTGGGTCA
  AGGTTAATAA TAAGTAAAAT GTTGTAAGTA GAGACGAGAC AGTAACAGCT GTGTGACATT
  CTTGGCGGCA GGGACATTGA CAGCATAGGG ACAGACAGTG AGCTTGGTTT TTGTTGCTCC
  TTTGGGTGAG CATTGGAGGC TTACAACAAT AGCAGAGAAA ACACCATTCG TTGCAGAAAT
  Y
  GTCATCACTC CCGTATACAA TCAAATGTCT ACAGCTGGGA AGCCAGGGGT GTGCGGAACC
  ACTTTGGAAG AAGACACAGA GCAAGCCTAT GAGAATGTCC TAGCGGAGAT TCAGTCTTTT
  GAGCTGCCCA TTGAAGCTAC TTTAAGGTAG GATGCTTTTA TGATTTGCAG CTTCTATATT
  TTACCTTCAT TTCTCTTTTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50794281	NES13548115	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	T	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37623054					SNP	C	C	C	C	C	C	T	C	C	C	T	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50794281	NES13548115	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:37525201 () rs orientation: forward

Symbol	Name	Function Class
Exoc6	exocyst complex component 6	within coordinates
Gm59222	predicted gene, 59222	within coordinates
Rr364832	regulatory region 364832	1185 bp distal
Rr364833	regulatory region 364833	1000 bp proximal
Tssr156225	transcription start site region 156225	118 bp downstream
Tssr156226	transcription start site region 156226	96 bp downstream
Tssr156227	transcription start site region 156227	44 bp upstream
Tssr156228	transcription start site region 156228	242 bp upstream