rs37624136 SNP Detail

Summary

• ID
  rs37624136
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:72574510 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCAGTAACA AACAGCTTTT
  GGGCTCGACG CCTGGCTGCC TGTGATCTAG AGAGGATGGT GGTAACGTCC TCCCTGAAAC
  ACCCCAGGAA CTAGCTCCCC CCCCCCCTCC CCAGAACCTC AGCATCTACC TCTCTTTTCC
  TTTCCTTCCA TCTCGGCCTA AATGACAGCA TAAGATACAC ACACATCAGA TAACCTGGCA
  K
  GGTCACAGGT AGGACTGACA AAGTCTCGGG AAGGCTCTCC TGTTACTGTG GGGAAAACGA
  ACCAAGTAGC ATAGAAGCAT GACCTGCTTT ACATACCGGA CTGGAGCACC GCTGGGGCCT
  AAAACAAGGA CAAAACACTC AAAGTTACGA AGTCATTCCT CCTGATAGTG GGTACCTGAG
  GAAATGGGCC TCCTATACAA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51695550	NES14820316	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37624136					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51695550	NES14820316	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:72574510 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17548	CpG island 17548	597 bp proximal
Elmod3	ELMO/CED-12 domain containing 3	Intron
Retsat	retinol saturase (all trans retinol 13,14 reductase)	1075 bp upstream
Rr399707	regulatory region 399707	802 bp upstream
Rr632239	regulatory region 632239	within coordinates
Rr632240	regulatory region 632240	805 bp proximal
Tssr57150	transcription start site region 57150	1067 bp upstream
Tssr61470	transcription start site region 61470	803 bp downstream
Tssr61471	transcription start site region 61471	854 bp downstream