rs37625833 SNP Detail

Summary

• ID
  rs37625833
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:92090103 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGGCCTGTGT CCTTTCTCCC CTCCAGCCTG CCCACACCTT
  TCGTTTGGCA AGATTGTTGT CTGGAGGGTA CAGGGTGGCT GTGGACAGTG TCACGCAGAG
  Y
  GCCCTCTACT GTAATGTCGG AGTGTCTTAA GTGTAGTGCC CTCCACTGGG AAGTGAGGCT
  TTGTGTGCAT AGCTGTGCTT CCTACAAAGT CCGAATCTT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	SM/J	WSB/EiJ
ss50605113	NES14040970	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C		C	C		T
ss145570230	ENSMUSSNP1916728	ENSEMBL	ENSEMBL_Sanger	f	SNP		C					T
ss322791508	CHEV_8_93887374	CHEVERUD	SCREENING_POP	f	SNP										C			T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	SM/J	WSB/EiJ
rs37625833					SNP	C	C	C	C	C	C	T	C	C	C	C	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50605113	NES14040970	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:92090103 () rs orientation: forward

Symbol	Name	Function Class
Fto	FTO alpha-ketoglutarate dependent dioxygenase	within coordinates
Rr178622	regulatory region 178622	within coordinates
Rr191071	regulatory region 191071	1504 bp distal
Rr191072	regulatory region 191072	within coordinates
Tssr78731	transcription start site region 78731	209 bp downstream