rs37626179 SNP Detail

Summary

• ID
  rs37626179
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:68730095 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAAGTCATG GTGCCCGGGC
  GGTGTGCATG CACGCGTGGT GAGTGCTTAC ACTGGCCGGG GCAGGTGCAG CTGCGGAAGC
  AACCTGCGAG GGTCGGGGCC ACGAAGCAGG TGCTGGGTGC CTGCAACAGT ACCCACAAAT
  CAGCGGAGGT CCAATCACTG GGCAGTGCCA TGTGGTCTCT CCTGGCCCGG AGGTGACCTT
  Y
  CAGACAGAGT CCTGAAACCT GTTTCAGCCC ACGCAGAACT CTATTAGAGA GCTCCCCGCG
  CGGGGACACC CTCCCGCGGG CGCCCTCACG TGGTACAGAG AGCAGCGGGC TCGTCCCCTC
  CCTATGGTTC TGGGTCAAGG CTCAATCTAA AATCAGCCTA GCAAGAACTT TCCTCAACAA
  AAGTAAACCA TCCGCAGCCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50562519	NES14070940	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37626179					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50562519	NES14070940	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:68730095 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20401	CpG island 20401	within coordinates
Rr664393	regulatory region 664393	866 bp distal
Rr664394	regulatory region 664394	within coordinates
Rr664395	regulatory region 664395	77 bp proximal
Rr664396	regulatory region 664396	1307 bp proximal
Rr664397	regulatory region 664397	1644 bp proximal
Sh2d4a	SH2 domain containing 4A	within coordinates
Tssr77594	transcription start site region 77594	738 bp downstream
Tssr77595	transcription start site region 77595	691 bp downstream
Tssr77596	transcription start site region 77596	628 bp downstream