rs37629673 SNP Detail

Summary

• ID
  rs37629673
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:33899752 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGACATTCA TAGCTTTGGG
  GTTGGTGAAA GCTAGTGGTT TGCTAAGTTA GTACAGCCCA ACAAGCATTA CCTGGTCAAA
  TGGGCAATGA ACGGCTGGCT ATTAAGGAGA CTAAAGATAG CTCAAGATAA TTTGGCTCTG
  GGTTTCCAAC TCTACACCAT CGAAGTTCTG ATCAAGTCAG TCAGCTTTAA CATAAGAGCA
  R
  AACGGCATCC ACAGCAAGAT GCTCACAGCA CAACACTCCT ACCTACGGCC CATCCAAAAG
  GTGAGCTGAC AAACATAATA TCCCAACTGC CTTCCCAGTG CCAGTTGCTG AGTTGTGTGT
  GTTCCACACA CTAAGCCAGG GAGAATAGTA TGCACTGGTA TTTGAAAAGT TAATTCACTT
  CTTAAATTCT TTCTGATTGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51450270	NES14437830	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37629673					SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51450270	NES14437830	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:33899752 () rs orientation: forward

Symbol	Name	Function Class
Ccdc39	coiled-coil domain containing 39	1293 bp upstream
Rr575077	regulatory region 575077	923 bp distal
Tssr32964	transcription start site region 32964	1355 bp upstream
Tssr32965	transcription start site region 32965	1290 bp upstream