rs37630607 SNP Detail

Summary

• ID
  rs37630607
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:75415144 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATGCCCATG TTTTCTGACT
  ACACAAAATA TGAGAGGTCT TCTCCATTCA GTCTCCAAAA AACAAGAGCA ATTGTGTTGC
  TGGCTTCTGC TACTTCTTGT AGGGCTGTCT GGATTATTTG TTAAGGCTGA AGGCCATGCA
  AATGAATGTC TCTACATTTT GGAGGAAAGG TCCTGTCTAC ACAGGGAATT CTTTTAAGCG
  W
  CTGAAGCATA TAGCCTCGAA GTATTGTACC ATCTCTCAGC TTGTATTCAT TTAGAACTGT
  CAGTCAAGCC CAGGACTGAT GTTACATATA CACTGTCCTG CACACATGGT GAAAACCTGT
  GTTTCTAACT GTTGGAAACC ACTCTAGCAG GACAACTTAA AACCAAAATC AGAAGCAAGA
  CAAACAAACA AACAAACAAC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51533170	NES14628268	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	T	A	A	A	A	A	A	A	A	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37630607					SNP	A	A	A	A	T	A	A	A	A	A	A	A	A	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51533170	NES14628268	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:75415144 () rs orientation: forward

Symbol	Name	Function Class
Lcp1	lymphocyte cytosolic protein 1	within coordinates
Rr369874	regulatory region 369874	306 bp upstream
Rr404213	regulatory region 404213	722 bp downstream
Rr404214	regulatory region 404214	1987 bp upstream
Tssr126623	transcription start site region 126623	1099 bp downstream
Tssr126624	transcription start site region 126624	1061 bp downstream
Tssr126625	transcription start site region 126625	907 bp downstream
Tssr126626	transcription start site region 126626	882 bp downstream
Tssr126627	transcription start site region 126627	800 bp downstream
Tssr126628	transcription start site region 126628	550 bp downstream
Tssr126629	transcription start site region 126629	105 bp upstream
Tssr126630	transcription start site region 126630	144 bp upstream
Tssr126631	transcription start site region 126631	1874 bp upstream
Tssr129769	transcription start site region 129769	1101 bp upstream
Tssr129770	transcription start site region 129770	1022 bp upstream
Tssr129771	transcription start site region 129771	697 bp downstream
Tssr129772	transcription start site region 129772	1553 bp downstream