rs37638533 SNP Detail

Summary

• ID
  rs37638533
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:9961859 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGAGGTGGCC GAATCTTCCT
  GCAGGATATA AAGGTAAGTA GATCCTAGGG GTGCCCTAAA TGAGCGGTTA GACTTTATTC
  AGGAAATGAT GGTGCACTGA GGCTTCTGTC CTTGTGTTGT TGGCAAATGG CAGTTGTCGA
  GCATCCTGCG GTGAAAGCTT AGAGGAAATT GAGGGCAATC CTTTGCCCAG AGCATGATGG
  Y
  TCAGTGTGAG GTGTTTCCTG GCTTGGGTTG ATTGGTAGAT GACTTGACCC GATGTTTCAT
  TCAGAAACCA GACCGTGATG ACTGGGAGAG CGGGCTGAAT GCAATGGAGT GTGCACTGCA
  CTTGGAAAAG AGTGTGAATC AGTCACTACT GGAACTGCAC AAACTGGCTA CTGACAAGAA
  TGATCCCCAC GTGAGTATCG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50605202	NES13645672	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	T	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37638533					SNP	C	C	C	C	C	T	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50605202	NES13645672	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:9961859 () rs orientation: forward

Symbol	Name	Function Class
Best1	bestrophin 1	679 bp downstream
Cpgi10595	CpG island 10595	1110 bp distal
Fth1	ferritin heavy polypeptide 1	within coordinates
Gm36913	predicted gene, 36913	1975 bp upstream
Rr543964	regulatory region 543964	1988 bp distal
Rr543965	regulatory region 543965	1762 bp distal
Rr543966	regulatory region 543966	493 bp distal
Rr543967	regulatory region 543967	within coordinates
Tssr155003	transcription start site region 155003	1784 bp downstream
Tssr155004	transcription start site region 155004	1643 bp downstream
Tssr155005	transcription start site region 155005	1377 bp downstream
Tssr155006	transcription start site region 155006	276 bp downstream
Tssr155007	transcription start site region 155007	203 bp downstream
Tssr155008	transcription start site region 155008	62 bp upstream
Tssr155009	transcription start site region 155009	408 bp upstream
Tssr155010	transcription start site region 155010	598 bp upstream
Tssr158133	transcription start site region 158133	1989 bp upstream
Tssr158134	transcription start site region 158134	1964 bp upstream
Tssr158135	transcription start site region 158135	1928 bp upstream
Tssr158136	transcription start site region 158136	1555 bp upstream
Tssr158137	transcription start site region 158137	258 bp upstream
Tssr158138	transcription start site region 158138	169 bp upstream
Tssr158139	transcription start site region 158139	90 bp downstream
Tssr158140	transcription start site region 158140	311 bp downstream
Tssr158141	transcription start site region 158141	362 bp downstream
Tssr158142	transcription start site region 158142	378 bp downstream
Tssr158143	transcription start site region 158143	437 bp downstream
Tssr158144	transcription start site region 158144	594 bp downstream