rs37638547 SNP Detail

Summary

• ID
  rs37638547
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:9960905 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATGGCGGGT CTGCTTGGTC
  ATGGTGTCGA GTGGCAGCCT TGGGGCCTGG TGTAAAGAGG CTTATCTCTT GTGAGCTTAC
  TCTTGTCCCC TTCAAAGCAG CCGCCTCCAC CTCTCTGCTT ATCACAGAGC CTCACTTGCA
  TTGAAACTTA TCGCTAGGAA TCTCCCCTTC TGTAGTTATC AGTGTCACCC CGACCTTGCA
  Y
  TTACAAGGCA TCATGTTACT GTATTTTTCT TATTTTGCAT GAGTGTGGCT TACTAACAAG
  TGGTAGGTAC ATACTTGTTG GGAAAAGCCT GCTATCAATT GCTGGACAAG GAAGTTTTCC
  ATGTAATAGT TTCTGAAAAA CAGGTTTGGG GAAGGCCTGG ACTTTGAAAC AGGTCCAACT
  TCTGTGGCTG TCATTCCTGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50605222	NES13645659	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37638547					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50605222	NES13645659	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:9960905 () rs orientation: forward

Symbol	Name	Function Class
Best1	bestrophin 1	1633 bp downstream
Cpgi10595	CpG island 10595	156 bp distal
Fth1	ferritin heavy polypeptide 1	within coordinates
Gm36913	predicted gene, 36913	1021 bp upstream
Rr543964	regulatory region 543964	1034 bp distal
Rr543965	regulatory region 543965	808 bp distal
Rr543966	regulatory region 543966	within coordinates
Rr543967	regulatory region 543967	790 bp proximal
Tssr155003	transcription start site region 155003	830 bp downstream
Tssr155004	transcription start site region 155004	689 bp downstream
Tssr155005	transcription start site region 155005	423 bp downstream
Tssr155006	transcription start site region 155006	637 bp upstream
Tssr155007	transcription start site region 155007	706 bp upstream
Tssr155008	transcription start site region 155008	1016 bp upstream
Tssr155009	transcription start site region 155009	1362 bp upstream
Tssr155010	transcription start site region 155010	1552 bp upstream
Tssr158131	transcription start site region 158131	1106 bp upstream
Tssr158132	transcription start site region 158132	1092 bp upstream
Tssr158133	transcription start site region 158133	1035 bp upstream
Tssr158134	transcription start site region 158134	1010 bp upstream
Tssr158135	transcription start site region 158135	974 bp upstream
Tssr158136	transcription start site region 158136	601 bp upstream
Tssr158137	transcription start site region 158137	678 bp downstream
Tssr158138	transcription start site region 158138	724 bp downstream
Tssr158139	transcription start site region 158139	1044 bp downstream
Tssr158140	transcription start site region 158140	1265 bp downstream
Tssr158141	transcription start site region 158141	1316 bp downstream
Tssr158142	transcription start site region 158142	1332 bp downstream
Tssr158143	transcription start site region 158143	1391 bp downstream
Tssr158144	transcription start site region 158144	1548 bp downstream