rs37646196 SNP Detail

Summary

• ID
  rs37646196
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:44890531 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCGGACCTTT TCACCCAGAC
  AGCCGCTGGA GAGTTCAGCG GGGATCTCGA GGCCCGGGCG GTGAGACCGA CGGGGCGGCC
  ATTGTGCTGC CCCAGGCTCT CCACAGGACG CCAGGAAGGA GGGAGGGAGG GGGGAGTCGC
  GAGGTCAAGG TCACCGTGCC CCCTCTCCGT CAGAACCCGG AAAACTGCCT CCTCGCTCCT
  M
  GGCTGCGCCT GCCTGAGGCC AGGCCTGAGA GTCAACCTCC CGCAACTCTT GACGGCTGCT
  CTATTGGGAA GGCGCCTAAG AGGCGGCAAC CCGACCCGGC TTCATTTCCC GCCCGCTAGG
  GACAGCCACC TCCTGTTCGG AGGACTCAGG ACACCAGCTT GCTTTCCCTT CTGAGGCCAT
  AGTTCCAGGG AAGGAGGTAA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss51480352	NES13971402	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs37646196					SNP	C	C	C	C	C	C	C	C	C	C	C	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51480352	NES13971402	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:44890531 () rs orientation: forward

Symbol	Name	Function Class
Cd37	CD37 antigen	1992 bp upstream
Cpgi19038	CpG island 19038	within coordinates
Rr380753	regulatory region 380753	within coordinates
Slc6a16	solute carrier family 6, member 16	within coordinates
Tssr66503	transcription start site region 66503	1 bp downstream
Tssr66504	transcription start site region 66504	2 bp upstream
Tssr72355	transcription start site region 72355	1974 bp upstream
Tssr72356	transcription start site region 72356	1820 bp upstream
Tssr72357	transcription start site region 72357	1812 bp upstream
Tssr72358	transcription start site region 72358	1787 bp upstream
Tssr72359	transcription start site region 72359	1757 bp upstream
Tssr72360	transcription start site region 72360	1720 bp upstream
Tssr72361	transcription start site region 72361	1697 bp upstream