rs37646762 SNP Detail

Summary

• ID
  rs37646762
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:21574500 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACCCCCGGA AGGAGTTAGA
  AACCCAAATA CTCTAAGCTG CTTTGGCCAT GGGATTTTAC ACTCTGGAAA CTTGAGATGC
  AACCATGAGT ACGTATGGCT AATGCCAAGG CAGTTACCTG CTTGCTCTCC CACGTGGAGC
  TCATGTCCAT ACATGAGTTG GTGCATACTT GTGTGCTCAA AGCCCACACT CGTACTCTTA
  Y
  GAGAGAGATG TCTTACTTTC CTCTGAGCCC CCCTCTCTTA AGTTTAGGCT TTGAGTTTAA
  GCCTAAACTA AAATATCTTC AATAAAATCT CTACTTCTGG TTCATTTTAC ATAGGTATTG
  TGTGGATCAG GAAAATCAGT CTCCAAGTTT TTATAACAAC AACAAGACAC ACAAGTGCAA
  AACCACAGCT TCCCATTTAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50694216	NES13603147	PERLEGEN	MM_PANEL2	f	SNP	T		C	C	C	T	C	C	C	T	C	T	T	C	T
ss146182910	ENSMUSSNP7112182	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37646762					SNP	T	T	C	C	C	T	C	C	C	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50694216	NES13603147	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:21574500 () rs orientation: forward

Symbol	Name	Function Class
1110059E24Rik	RIKEN cDNA 1110059E24 gene	177 bp downstream
Gm38486	predicted gene, 38486	934 bp upstream
Gm59243	predicted gene, 59243	within coordinates
Rr356955	regulatory region 356955	1901 bp proximal
Rr364167	regulatory region 364167	902 bp proximal