rs37647977 SNP Detail

Summary

• ID
  rs37647977
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:83686876 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACAACCAGCA GGCACTGACA
  GTCCACACTG TCCCCTCTGC CGGCCAATTA CACACCATGG AAGCCATACC CCACCCCCAC
  CCCCGCTCCT TTCTTTGCGA ATAGGGCCCA GCAGGCATCC TCTCTTACCG CTGTTCTTTC
  CTTTTCCAGC ACTACAAGAA TCAGTGAGAA TCGCCAAGTC ACATCTACCA CCTCTCCCAA
  M
  ATCTCCAACC GTTTTCACAC ACACACACAC ACACACACAC ACACACACCA CAGACCAAGG
  CACTGACTGA CTCCCCACAC CCAACACCTG TTCAACCTCA GAGACAGAGA CCCCACAAGC
  CTACCCTTGG TGGTCACAGA CACCCGCTAC CAGATCTTGG GATCTCCTGA AGTACTTTGG
  CTTGGACTCA CACCAAGCAT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BALB/cByJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51352657	NES13742489	PERLEGEN	MM_PANEL2	f	SNP	A	A	C	A	C	C	A	A	C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BALB/cByJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37647977					SNP	A	A	C	A	C	C	A	A	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51352657	NES13742489	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:83686876 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17611	CpG island 17611	559 bp proximal
Gm55235	predicted gene, 55235	845 bp upstream
Tssr57361	transcription start site region 57361	1338 bp upstream
Tssr61702	transcription start site region 61702	956 bp downstream
Vax2	ventral anterior homeobox 2	1370 bp upstream
Vax2os	ventral anterior homeobox 2, opposite strand	within coordinates