rs37648803 SNP Detail

Summary

• ID
  rs37648803
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:49024083 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTAAAACTCT TGCAGATACC
  TCACCATGAC ATTAAATGAG TCCTAAGGGA AGAGTATGCA TTTCATGTGC AAATCGTTTA
  AACCGAATAG CCTTCATCTA TAAATTAGGA ACTGGCTGGA TTGCCCCTCT GTGGAGCTCT
  TTCACTTTAA GCAGCTGTGA GCAGTTGTTA CCTGTATGCA AGCAGAAAGT TGCTTCATCG
  R
  GTTTTGCATC AAGGCCGGCA CCAGCTCCCT TTCAGGAGCG TCCAGCCTGT TCTCTTCGCA
  GAGCAACCTT TAACCTTTCA GAAACAACTC TGCCTAAAGA TCATGTGATG TTACCAGTAA
  CTCAAAATGT CCATCTTTTC ACAGGCCAGT ATTTCCAAAA ACTGGGTCGG TGTTCAGCAC
  GGGTTTCTAT AAACACAGTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51658470	NES14824250	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37648803					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51658470	NES14824250	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:49024083 () rs orientation: forward

Symbol	Name	Function Class
D6Dcr8	DNA Segment, Chr 6, Derry C. Roopenian 8	699 bp distal
D6Mit142	DNA segment, Chr 6, Massachusetts Institute of Technology 142	711 bp distal
Gm56981	predicted gene, 56981	within coordinates
Gpnmb	glycoprotein (transmembrane) nmb	within coordinates
Tssr56319	transcription start site region 56319	1832 bp downstream
Tssr56320	transcription start site region 56320	1792 bp downstream
Tssr56321	transcription start site region 56321	1778 bp downstream
Tssr56322	transcription start site region 56322	1760 bp downstream
Tssr56323	transcription start site region 56323	1724 bp downstream
Tssr56324	transcription start site region 56324	1694 bp downstream
Tssr56325	transcription start site region 56325	1538 bp downstream
Tssr56326	transcription start site region 56326	1523 bp downstream
Tssr56327	transcription start site region 56327	1469 bp downstream
Tssr56328	transcription start site region 56328	1391 bp downstream
Tssr56329	transcription start site region 56329	1315 bp downstream
Tssr56330	transcription start site region 56330	1144 bp downstream
Tssr56331	transcription start site region 56331	1099 bp downstream
Tssr56332	transcription start site region 56332	1026 bp downstream
Tssr56333	transcription start site region 56333	988 bp downstream
Tssr56334	transcription start site region 56334	978 bp downstream
Tssr56335	transcription start site region 56335	958 bp downstream
Tssr56336	transcription start site region 56336	931 bp downstream
Tssr56337	transcription start site region 56337	908 bp downstream
Tssr56338	transcription start site region 56338	892 bp downstream
Tssr56339	transcription start site region 56339	878 bp downstream
Tssr56340	transcription start site region 56340	688 bp downstream
Tssr56341	transcription start site region 56341	428 bp downstream
Tssr56342	transcription start site region 56342	396 bp downstream
Tssr56343	transcription start site region 56343	143 bp upstream
Tssr56344	transcription start site region 56344	157 bp upstream
Tssr56345	transcription start site region 56345	175 bp upstream
Tssr56346	transcription start site region 56346	212 bp upstream
Tssr56347	transcription start site region 56347	250 bp upstream
Tssr56348	transcription start site region 56348	276 bp upstream
Tssr56349	transcription start site region 56349	599 bp upstream
Tssr56350	transcription start site region 56350	626 bp upstream
Tssr56351	transcription start site region 56351	656 bp upstream
Tssr56352	transcription start site region 56352	669 bp upstream
Tssr56353	transcription start site region 56353	738 bp upstream
Tssr56354	transcription start site region 56354	753 bp upstream
Tssr56355	transcription start site region 56355	778 bp upstream
Tssr56356	transcription start site region 56356	796 bp upstream
Tssr56357	transcription start site region 56357	808 bp upstream
Tssr56358	transcription start site region 56358	826 bp upstream
Tssr56359	transcription start site region 56359	841 bp upstream
Tssr56360	transcription start site region 56360	878 bp upstream
Tssr60846	transcription start site region 60846	1757 bp upstream
Tssr60847	transcription start site region 60847	1674 bp upstream
Tssr60848	transcription start site region 60848	741 bp upstream
Tssr60849	transcription start site region 60849	180 bp downstream
Tssr60850	transcription start site region 60850	235 bp downstream
Tssr60851	transcription start site region 60851	705 bp downstream
Tssr60852	transcription start site region 60852	748 bp downstream
Tssr60853	transcription start site region 60853	758 bp downstream
Tssr60854	transcription start site region 60854	777 bp downstream
Tssr60855	transcription start site region 60855	810 bp downstream
Tssr60856	transcription start site region 60856	848 bp downstream
Tssr60857	transcription start site region 60857	877 bp downstream