rs37649118 SNP Detail

Summary

• ID
  rs37649118
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:113658724 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCAGCCTTGG AGGCAGTCGG
  CTCCAGTTTC AGAGAATTTC AGCAAATGCC CTCCATGACT CGGTTTCCCC ATGGGCAGTC
  GATAGGGACA TGGCCAAGGA ATGACAAAGT TGGAGCCCTG TCCAGCTCCA GGCAAGGCTC
  CAACCTGAGC AGGGCAGGGT GGAGAGGCAG GAGAACAAGG GCCCAGTGTG TACCTGGCTC
  R
  CTCAGAGACT TGAATACAAG AGTGCCATGC TCCACAGCCT CCAGCCGGGC TCCCGGGGTG
  ATCAGAAAGC CACTAAGTGG CCAGAGGCTG AAGCCTGACA GCCACGACGC TGCAGAGTGA
  CCCGGGGTGG ACCGTGTGCA GAACGGGCCA AGGAGTAAGA AGGATGTGCC CTGTGGCTGA
  TGGAATTGGC CTCAGGGCAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
ss51794406	NES14722571	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	A	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
rs37649118					SNP	G	G	G	G	G	A	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51794406	NES14722571	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:113658724 () rs orientation: forward

Symbol	Name	Function Class
Tssr48022	transcription start site region 48022	13 bp downstream
Tssr48023	transcription start site region 48023	41 bp upstream
Wscd2	WSC domain containing 2	within coordinates