rs37649663 SNP Detail

Summary

• ID
  rs37649663
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:110231146 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGCTGCTCT GCTGGAGTCG
  TTCCTATTGC TAAACCTGTG ACTTGAGACA TTTCTGAGCA GACAGAGACC CTCTTATGAC
  CAGCCTGCTG GAGCACTTGG GATTAACTAA AGGTCACCAC AAAGCCTCGG GCCCTTCTCT
  GGAGGCTGTT CAACTGGCCT TCGGGATTTT TTTTTTTCTT CATAAGGTGC TGAAGGTTAT
  Y
  GGGATAGGGC CTCCTGATGC CAAGAACACA TCATTTATCA ACGGTGTTGA GTCATTTTGT
  GAGCTGATTT GAACCTGTCC ACAGCTAAGA AATAGTCACA GTTCTTTTTT TTTTTTTTTT
  TTTTAATCTG TAGCTACTGT TGCTGGCTGT GGGAATGGTA TCACCCATTT GTAATCAACC
  AAGGGTACCA GACGATTTCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss50455939	NES14118518	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T		C	T	C		T
ss322397542	CHEV_7_117775453	CHEVERUD	SCREENING_POP	f	SNP										T				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs37649663					SNP	T	T	T	T	T	T	T	T	T	T	C	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50455939	NES14118518	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:110231146 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19578	CpG island 19578	1136 bp distal
Gm28863	predicted gene 28863	1042 bp upstream
Gm72687	predicted gene, 72687	1717 bp upstream
Rr400547	regulatory region 400547	1431 bp downstream
Rr653271	regulatory region 653271	1728 bp distal
Rr653272	regulatory region 653272	1227 bp distal
Rr653273	regulatory region 653273	1573 bp distal
Rr653274	regulatory region 653274	16 bp distal