rs37653062 SNP Detail

Summary

• ID
  rs37653062
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:47774405 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCCTTCCTT CCTTCCTTCC
  TTCCCTCCCT CCCTCCCTCC CTCCCTCCCT CCCTCCCTCC CTTCCTTCCT TCCTTCCTTC
  CTTCCTTCCT TCCTTCCTTC CTTCCTTCTT TCCTTCTTTC AGTGCTGGGA TCAAAACCAG
  GCTCCTTTGC GTGACAAGCA AGTACTCATA GCCACTGGGT CTATATCTTG GCCCAGGAAT
  R
  GCTTCTTTAC ATGTAATTCT GCCATTAAGG ATCCCAACCT ATTGCTGACA GTCTTGATTT
  TCAGCCACCA TTTTCATATA CCATCATTCA CAAATCAAAA ATAAAAGTTG CCAACCTCCT
  CACTGTGGGT CCCATGCACC CCCTTCTCCA AGCCTCAGAC ACGACCTTCC TTCTGTCTGA
  AAGGTCCTTC TCGGCTCCAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50857492	NES13520333	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37653062					SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50857492	NES13520333	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:47774405 () rs orientation: forward

Symbol	Name	Function Class
Cfap43	cilia and flagella associated protein 43	within coordinates
Cpgi11037	CpG island 11037	789 bp proximal
Tssr159755	transcription start site region 159755	1141 bp downstream