rs37655343 SNP Detail

Summary

• ID
  rs37655343
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:59994854 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAGGATCTA AGTTTGGTTC
  CCATCACCCA CATAACAATT TACAACCATC TGTGTGCACT TGTGTGTATG TGTATGTCTA
  TGTATGTACA CACATACACA ACACACACAC ACATACACAC ACACACACTG TGCTGATGTG
  GCATACTGTG GTATGGTGCT TCGTACTCCC GGAGGACTGA AGACAGAGAG TTACAGCTAA
  R
  TTCTTGCTCA GAGCCTGGCA TCAGTGGCAG GAAGCTGGTC TCCTAAAATT CCTGCCCCAT
  TCTCAGGGGA GTCTAATGGC ATCTTGGTGA AGGTATAAGA AAGCCCTGGC ACTTGGCATC
  ACTGGGCCCC TCTGAAAGGC CAACTTGGCT CCTAGATTCC AGGAGTATCA GCTGAGGTCT
  CTGTTGTGCC TTCCCCATGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52023993	NES15040355	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	A	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37655343					SNP	G	G	G	G	A	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52023993	NES15040355	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:59994854 () rs orientation: forward

Symbol	Name	Function Class
Rr196116	regulatory region 196116	547 bp proximal
Rr204367	regulatory region 204367	577 bp proximal
Rr209877	regulatory region 209877	1948 bp proximal
Thsd4	thrombospondin, type I, domain containing 4	within coordinates