rs37658595 SNP Detail

Summary

• ID
  rs37658595
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:135390069 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGGTTAGGG TGCCTGTAGG
  ACTCTAGGCC AAGTGGTCCT TTTGTAGAGG CAATACAGTG ATCAGGGCCG CTTCCTGGCC
  AAGTGTGTCA TCGTCAGCAG CTTGGCTGCA CCATCCAACA CGGTGTAAGA TTGGTTCAAC
  ATCAGGGATC CCAAGTCGAG CTCTGGGGCC TGGCATCACA TCTCCCACTG AAGGGAAGGG
  M
  TCGGACCCTT GGCCAAAACC TGACTCTAGA TTCAGAACTC ACCAGAACTG TGTTTTAGTT
  TGTTTTCTCT TGGCCAAATG GAACTTCCTG TCCTAAGAAA ATTCACCCTC TAAATTCATT
  TTCTGGAACT AGTCCAGCCC TGACAGCCAC GATGGCTGAC AGATTGCAGT GTAAGTGAAT
  CAGGCATAAT AATGTCCTCT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51379222	NES14465328	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	A	C	C	C	A	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37658595					SNP	C	C	C	C	C	A	C	C	C	A	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51379222	NES14465328	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:135390069 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Nav1	neuron navigator 1			Intron
				Noncoding-Transcript-Variant
Rr419148	regulatory region 419148			1606 bp distal
Rr419149	regulatory region 419149			597 bp distal
Rr419150	regulatory region 419150			967 bp distal
Rr419151	regulatory region 419151			16 bp proximal