rs37661599 SNP Detail

Summary

• ID
  rs37661599
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:16679086 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGGAG GTGCACAGGG CCCTCCTGAT
  Y
  ACGGGCATCC CTGAGCGCCT GCAGC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss51882287	NES14894013	PERLEGEN	MM_PANEL2	f	SNP	C		C	C	C	C	C	C	C	T	C	C	C	T
ss148400032	ENSMUSSNP6954213	ENSEMBL	ENSEMBL_Sanger	f	SNP		C							C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs37661599					SNP	C	C	C	C	C	C	C	C	C	T	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51882287	NES14894013	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:16679086 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18406	CpG island 18406	within coordinates
Cpgi18407	CpG island 18407	1099 bp proximal
Gm71929	predicted gene, 71929	131 bp downstream
Pnma8b	PNMA family member 8B	within coordinates
Rr368243	regulatory region 368243	504 bp downstream
Rr642821	regulatory region 642821	1792 bp distal
Rr642822	regulatory region 642822	469 bp distal
Rr642823	regulatory region 642823	535 bp distal
Rr642824	regulatory region 642824	482 bp proximal
Tssr64660	transcription start site region 64660	441 bp downstream
Tssr64661	transcription start site region 64661	533 bp upstream
Tssr70792	transcription start site region 70792	488 bp downstream