rs37666763 SNP Detail

Summary

• ID
  rs37666763
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:40366037 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATACCCCGAG TCCAGAAGTA
  AATTGAAGAG GGGACATGGT ATCCATGAGT AGCGGGGACT CCATGCCACC ATGGGCAACT
  TCCTGAAGCA ACACACACAC ACATTACCCT GTGAGCTTCA TGCTAGTTCT TGAATGTGAA
  CAGCAAACAT CTCCCTAGCA AAACTGAAGC TGGCACGGTG ATCGATCGTG AGATGTGTCC
  R
  TGATGTGGTA GAAAATGTGA ATACGTCACC TCTCCATAGG CAACATGGAC CTGTACCAGC
  AGGGTAGTGT AGGAAAAAGA AAATGACAAA AAGTGAAATG GGATTCGGAA GTCCATGTGG
  AGGCGTCACT TAAACTTCTG TCACTAGTCT CCCGACACCT CCACCTGTAC AATGGAATCA
  TAGCCTAATA CTATCTACCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50677593	NES14010791	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	A	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37666763					SNP	G	G	G	G	G	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50677593	NES14010791	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:40366037 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21594	CpG island 21594	411 bp proximal
Gramd1b	GRAM domain containing 1B	within coordinates
Rr676839	regulatory region 676839	663 bp proximal
Rr676840	regulatory region 676840	919 bp proximal
Rr676841	regulatory region 676841	1094 bp proximal
Tssr84449	transcription start site region 84449	552 bp upstream
Tssr84450	transcription start site region 84450	1150 bp upstream
Tssr88934	transcription start site region 88934	601 bp downstream
Tssr88935	transcription start site region 88935	677 bp downstream
Tssr88936	transcription start site region 88936	702 bp downstream
Tssr88937	transcription start site region 88937	765 bp downstream
Tssr88938	transcription start site region 88938	1033 bp downstream
Tssr88939	transcription start site region 88939	1040 bp downstream
Tssr88940	transcription start site region 88940	1096 bp downstream
Tssr88941	transcription start site region 88941	1378 bp downstream
Tssr88942	transcription start site region 88942	1396 bp downstream
Tssr88943	transcription start site region 88943	1411 bp downstream
Tssr88944	transcription start site region 88944	1454 bp downstream
Tssr88945	transcription start site region 88945	1489 bp downstream
Tssr88946	transcription start site region 88946	1571 bp downstream
Tssr88947	transcription start site region 88947	1599 bp downstream
Tssr88948	transcription start site region 88948	1646 bp downstream