rs37673297 SNP Detail

Summary

• ID
  rs37673297
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:88530577 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGACCTGGCT TCTTATCCTG
  TAAGCATGTC ACCCCTCTGA GTAGAGGGGG CAGCAAGGAA TGGGACATGA TGCTTGTGAG
  CAGCGTGGTT GAGCCCAGAA GCCAGCACTC CCTCGGCTTC CTGACTGGCA GTAGGGCTGA
  AGGGCCAAGA GGCCAGGGGC CAAGAGACAC GTGGCAGCAC CCAAGTTTAA AGCACACAGA
  Y
  GAAAGAGATG CAAGCCGGGG ATCACCAAGG GAAGCTAATG GCATAGGTCA CGAAGGGAAA
  GGCAAAGGAC GGACTGATGG ACAAGAGAGC AGTGTTAGAC CCAGAAAGCA GCATGCACCC
  TGAGGGCAGT CCTGTTCCCA AAGCAGGTCG GACACTGGCC ATCCGCCTCT CCTCCAGCTA
  GTCGGCTCAT TTTACCCCCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss50598739	NES14052509	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	C	C	C		T	C	C	T		C
ss145451902	ENSMUSSNP4536163	ENSEMBL	ENSEMBL_Sanger	f	SNP	T				C
ss322761671	CHEV_8_90327848	CHEVERUD	SCREENING_POP	f	SNP								T					C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs37673297					SNP	T	T	T	T	C	C	C	T	T	C	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50598739	NES14052509	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:88530577 () rs orientation: forward

Symbol	Name	Function Class
Rr667021	regulatory region 667021	within coordinates
Rr667022	regulatory region 667022	480 bp proximal
Tssr82324	transcription start site region 82324	441 bp downstream
Tssr82325	transcription start site region 82325	462 bp downstream
Zfp423	zinc finger protein 423	within coordinates